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Publications

2023

Schema Playground: a tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data
Marco A. Cano, Ginger Tsueng, Xinghua Zhou, Jiwen Xin, Laura D. Hughes, Julia L. Mullen, Andrew I. Su, Chunlei Wu
BMC Bioinformatics  ·  20 Apr 2023  ·  doi:10.1186/s12859-023-05258-4  ·  PMID: 37081398  ·  PMCID: PMC10116472
MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes
Ricardo Avila, Vincent Rubinetti, Xinghua Zhou, Dongbo Hu, Zhongchao Qian, Marco Alvarado Cano, Everaldo Rodolpho, Ginger Tsueng, Casey Greene, Chunlei Wu
Nucleic Acids Research  ·  18 Apr 2023  ·  doi:10.1093/nar/gkad289  ·  PMID: 37070209  ·  PMCID: PMC10481249
Enabling profile updates through the Data Discovery Engine (DDE)
Ginger Tsueng, Sahar Frika, Alasdair J. G. Gray, Marcos Casado Barbero, Alban Gaignard, Ivan Mičetić, Leyla Jael Castro, Nick Juty
Center for Open Science  ·  03 Apr 2023  ·  doi:10.37044/osf.io/3b9gp
Addressing barriers in FAIR data practices for biomedical data
Laura D. Hughes, Ginger Tsueng, Jack DiGiovanna, Thomas D. Horvath, Luke V. Rasmussen, …, Serdar Turkarslan, Qinglong Wu, Chunlei Wu, Andrew I. Su, Lars Pache
Scientific Data  ·  23 Feb 2023  ·  doi:10.1038/s41597-023-01969-8  ·  PMID: 36823198  ·  PMCID: PMC9950056

2022

Figures associated with "Developing a standardized but extendable framework to increase the findability of infectious disease datasets"
Ginger Tsueng, Marco A. Alvarado Cano, José Bento, Candice Czech, Lars Pache, …, Andrew I. Su, Chunlei Wu, Liliana Brown, Reed S. Shabman, Laura D. Hughes
Zenodo  ·  10 Jul 2022  ·  doi:10.5281/zenodo.6816052
A retrospective evaluation of a decade of Gene Wiki Reviews and their impact
Andre J. van Wijnen, Erica Golemis, Israel Hanukoglu, Stephen Kwok-Wing Tsui, Eric Hu, Sabah Ul-Hasan, Janet Joy, Andrew I. Su, Ginger Tsueng
Gene  ·  01 Jul 2022  ·  doi:10.1016/j.gene.2022.146534  ·  PMID: 35525475
Outbreak.info genomic reports: scalable and dynamic surveillance of SARS-CoV-2 variants and mutations
Karthik Gangavarapu, Alaa Abdel Latif, Julia L. Mullen, Manar Alkuzweny, Emory Hufbauer, …, Marc A. Suchard, Chunlei Wu, Andrew I. Su, Kristian G. Andersen, Laura D. Hughes
Cold Spring Harbor Laboratory  ·  29 Jan 2022  ·  doi:10.1101/2022.01.27.22269965
Outbreak.info Research Library: A standardized, searchable platform to discover and explore COVID-19 resources
Ginger Tsueng, Julia L. Mullen, Manar Alkuzweny, Marco Cano, Benjamin Rush, …, Kristian G. Andersen, Chunlei Wu, Andrew I. Su, Karthik Gangavarapu, Laura D. Hughes
Cold Spring Harbor Laboratory  ·  21 Jan 2022  ·  doi:10.1101/2022.01.20.477133  ·  PMID: 35132411  ·  PMCID: PMC8820656

2021

BioThings SDK: a toolkit for building high-performance data APIs in biomedical research
Sebastien Lelong, Xinghua Zhou, Cyrus Afrasiabi, Zhongchao Qian, Marco Alvarado Cano, …, Yao Yao, Ricardo Avila, Greg Taylor, Andrew I Su, Chunlei Wu
Cold Spring Harbor Laboratory  ·  19 Oct 2021  ·  doi:10.1101/2021.10.18.464256

2019

Wikidata as a FAIR knowledge graph for the life sciences
Andra Waagmeester, Gregory Stupp, Sebastian Burgstaller-Muehlbacher, Benjamin M. Good, Malachi Griffith, …, Roger Tu, Sabah Ul-Hasan, Egon Willighagen, Chunlei Wu, Andrew I. Su
Cold Spring Harbor Laboratory  ·  21 Oct 2019  ·  doi:10.1101/799684
Applying citizen science to gene, drug and disease relationship extraction from biomedical abstracts
Ginger Tsueng, Max Nanis, Jennifer T Fouquier, Michael Mayers, Benjamin M Good, Andrew I Su
Bioinformatics  ·  03 Sep 2019  ·  doi:10.1093/bioinformatics/btz678  ·  PMID: 31504205  ·  PMCID: PMC8104067
Aligning Needs: Integrating Citizen Science Efforts into Schools Through Service Requirements.
Ginger Tsueng, Arun Kumar, Steven Max Nanis, Andrew I Su
Human Computation  ·  02 Jun 2019  ·  doi:10.15346/hc.v6i1.4

2018

Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration
Jiwen Xin, Cyrus Afrasiabi, Sebastien Lelong, Julee Adesara, Ginger Tsueng, Andrew I. Su, Chunlei Wu
BMC Bioinformatics  ·  01 Feb 2018  ·  doi:10.1186/s12859-018-2041-5  ·  PMID: 29390967  ·  PMCID: PMC5796402

2017

Science Game Lab: tool for the unification of biomedical games with a purpose
Benjamin M. Good, Sarah Santini, Margaret Wallace, Nicholas Fortugno, John Szeder, Patrick Mooney, Jerome Waldispuhl, Ginger Tsueng, Andrew I Su
Cold Spring Harbor Laboratory  ·  10 Jul 2017  ·  doi:10.1101/156141

2016

Gene Wiki Reviews—Raising the quality and accessibility of information about the human genome
Ginger Tsueng, Benjamin M. Good, Peipei Ping, Erica Golemis, Israel Hanukoglu, Andre J. van Wijnen, Andrew I. Su
Gene  ·  01 Nov 2016  ·  doi:10.1016/j.gene.2016.04.053  ·  PMID: 27150585  ·  PMCID: PMC5944608
High-performance web services for querying gene and variant annotation
Jiwen Xin, Adam Mark, Cyrus Afrasiabi, Ginger Tsueng, Moritz Juchler, …, Patricia L. Whetzel, Christopher J. Mungall, Sean D. Mooney, Andrew I. Su, Chunlei Wu
Genome Biology  ·  06 May 2016  ·  doi:10.1186/s13059-016-0953-9  ·  PMID: 27154141  ·  PMCID: PMC4858870
Citizen Science for Mining the Biomedical Literature
Ginger Tsueng, Steven M. Nanis, Jennifer Fouquier, Benjamin M Good, Andrew I Su
Cold Spring Harbor Laboratory  ·  27 Jan 2016  ·  doi:10.1101/038083

2015

MyGene.info and MyVariant.info: Gene and Variant Annotation Query Services
Jiwen Xin, Adam Mark, Cyrus Afrasiabi, Ginger Tsueng, Moritz Juchler, …, Patricia Whetzel, Christopher J Mungall, Sean Mooney, Andrew I Su, Chunlei Wu
Cold Spring Harbor Laboratory  ·  30 Dec 2015  ·  doi:10.1101/035667
BioGPS: building your own mash-up of gene annotations and expression profiles
Chunlei Wu, Xuefeng Jin, Ginger Tsueng, Cyrus Afrasiabi, Andrew I. Su
Nucleic Acids Research  ·  17 Nov 2015  ·  doi:10.1093/nar/gkv1104  ·  PMID: 26578587  ·  PMCID: PMC4702805

2014

Coxsackievirus B Exits the Host Cell in Shed Microvesicles Displaying Autophagosomal Markers
Scott M. Robinson, Ginger Tsueng, Jon Sin, Vrushali Mangale, Shahad Rahawi, …, Roland Wolkowicz, Christopher T. Cornell, J. Lindsay Whitton, Roberta A. Gottlieb, Ralph Feuer
PLoS Pathogens  ·  10 Apr 2014  ·  doi:10.1371/journal.ppat.1004045  ·  PMID: 24722773  ·  PMCID: PMC3983045

2012

The role of autophagy during coxsackievirus infection of neural progenitor and stem cells
Jenna M. Tabor-Godwin, Ginger Tsueng, M. Richard Sayen, Roberta A. Gottlieb, Ralph Feuer
Autophagy  ·  23 Jun 2012  ·  doi:10.4161/auto.19781  ·  PMID: 22751470  ·  PMCID: PMC3427259

2011

Coxsackievirus Preferentially Replicates and Induces Cytopathic Effects in Undifferentiated Neural Progenitor Cells
Ginger Tsueng, Jenna M. Tabor-Godwin, Aparajita Gopal, Chelsea M. Ruller, Steven Deline, …, Ricardo F. Frausto, Richard Milner, Stephen J. Crocker, J. Lindsay Whitton, Ralph Feuer
Journal of Virology  ·  15 Jun 2011  ·  doi:10.1128/JVI.02261-10  ·  PMID: 21471247  ·  PMCID: PMC3126326
Enterovirus infections of the central nervous system
Ross E. Rhoades, Jenna M. Tabor-Godwin, Ginger Tsueng, Ralph Feuer
Virology  ·  01 Mar 2011  ·  doi:10.1016/j.virol.2010.12.014  ·  PMID: 21251690  ·  PMCID: PMC3060663

2010

A preliminary investigation on the growth requirement for monovalent cations, divalent cations and medium ionic strength of marine actinomycete Salinispora
Ginger Tsueng, Kin Sing Lam
Applied Microbiology and Biotechnology  ·  19 Jan 2010  ·  doi:10.1007/s00253-009-2424-7  ·  PMID: 20084507

2009

Effect of cobalt and vitamin B12 on the production of salinosporamides by Salinispora tropica
Ginger Tsueng, Kin Sing Lam
The Journal of Antibiotics  ·  06 Feb 2009  ·  doi:10.1038/ja.2009.7  ·  PMID: 19198638
Antiprotealide Is a Natural Product
Rama Rao Manam, Venkat R. Macherla, Ginger Tsueng, Chris W. Dring, Jeffrey Weiss, Saskia T. C. Neuteboom, Kin S. Lam, Barbara C. Potts
Journal of Natural Products  ·  09 Jan 2009  ·  doi:10.1021/np800578e  ·  PMID: 19133779

2008

Lynamicins A−E, Chlorinated Bisindole Pyrrole Antibiotics from a Novel Marine Actinomycete
Katherine A. McArthur, Scott S. Mitchell, Ginger Tsueng, Arnold Rheingold, Donald J. White, Jennifer Grodberg, Kin S. Lam, Barbara C. M. Potts
Journal of Natural Products  ·  09 Oct 2008  ·  doi:10.1021/np800286d  ·  PMID: 18842058
Growth of Salinispora tropica strains CNB440, CNB476, and NPS21184 in nonsaline, low-sodium media
Ginger Tsueng, Kin S. Lam
Applied Microbiology and Biotechnology  ·  01 Oct 2008  ·  doi:10.1007/s00253-008-1614-z  ·  PMID: 18677472
Seawater requirement for the production of lipoxazolidinones by marine actinomycete strain NPS8920
Michelle J. Sunga, Sy Teisan, Ginger Tsueng, Venkat R. Macherla, Kin S. Lam
Journal of Industrial Microbiology & Biotechnology  ·  04 Apr 2008  ·  doi:10.1007/s10295-008-0344-7  ·  PMID: 18389298
Defined salt formulations for the growth of Salinispora tropica strain NPS21184 and the production of salinosporamide A (NPI-0052) and related analogs
Ginger Tsueng, Sy Teisan, Kin S. Lam
Applied Microbiology and Biotechnology  ·  01 Apr 2008  ·  doi:10.1007/s00253-008-1358-9  ·  PMID: 18239915
A low-sodium-salt formulation for the fermentation of salinosporamides by Salinispora tropica strain NPS21184
Ginger Tsueng, Kin S. Lam
Applied Microbiology and Biotechnology  ·  01 Apr 2008  ·  doi:10.1007/s00253-008-1357-x  ·  PMID: 18239916

2007

Stabilization Effect of Resin on the Production of Potent Proteasome Inhibitor NPI-0052 During Submerged Fermentation of Salinispora tropica
Ginger Tsueng, Kin S Lam
The Journal of Antibiotics  ·  01 Jul 2007  ·  doi:10.1038/ja.2007.61  ·  PMID: 17721007
Unique butyric acid incorporation patterns for salinosporamides A and B reveal distinct biosynthetic origins
Ginger Tsueng, Katherine A. McArthur, Barbara C. M. Potts, Kin S. Lam
Applied Microbiology and Biotechnology  ·  06 Mar 2007  ·  doi:10.1007/s00253-007-0899-7  ·  PMID: 17340108
Effects of Halogens on the Production of Salinosporamides by the Obligate Marine Actinomycete Salinispora tropica
Kin S Lam, Ginger Tsueng, Katherine A Mcarthur, Scott S Mitchell, Barbara C M Potts, Jianlin Xu
The Journal of Antibiotics  ·  01 Jan 2007  ·  doi:10.1038/ja.2007.2  ·  PMID: 17390584

Search for Ginger Tsueng's papers on the Publications page