I joined as a Research Programmer in Summer 2020. My interests include data science, biochemistry, immunology, and bioinformatics infrastructure (KGs / data integration, interoperability, and storage / ontologies / reasoning). On off-hours, I tutor, knit, and do yoga.

Education

MS, Bioinformatics and Computational Biomedicine, OHSU

BA, Biology and Chemistry, Northwestern University

Publications

BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs
Jackson Callaghan, Colleen H Xu, Jiwen Xin, Marco Alvarado Cano, Anders Riutta, …, Kristina Hanspers, Ayushi Agrawal, Alexander R Pico, Chunlei Wu, Andrew I Su
Bioinformatics  ·  01 Sep 2023  ·  doi:10.1093/bioinformatics/btad570  ·  PMID: 37707514  ·  PMCID: PMC11015316
An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges
Karamarie Fecho, Chris Bizon, Tursynay Issabekova, Sierra Moxon, Anne E. Thessen, …, Casey Ta, Paul B. Watkins, Mark D. Williams, Chunlei Wu, Colleen H. Xu
Journal of Clinical and Translational Science  ·  01 Jan 2023  ·  doi:10.1017/cts.2023.619  ·  PMID: 37900350  ·  PMCID: PMC10603356

Search for Colleen Xu's papers on the Publications page

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