I joined as a Research Programmer in Summer 2020. My interests include data science, biochemistry, immunology, and bioinformatics infrastructure (KGs / data integration, interoperability, and storage / ontologies / reasoning). On off-hours, I tutor, knit, and do yoga.
Education
MS, Bioinformatics and Computational Biomedicine, OHSU
BA, Biology and Chemistry, Northwestern University
Publications
2024
Generating Biomedical Knowledge Graphs from Knowledge Bases, Registries, and Multiomic Data
Cold Spring Harbor Laboratory
·
15 Nov 2024
·
doi:10.1101/2024.11.14.623648
·
PMID: 39605475
·
PMCID: PMC11601480
BioThings Explorer: a tool for retrieving custom biomedical knowledge graphs using a federated network of biomedical APIs
F1000 Research Limited
·
01 Jan 2024
·
doi:10.7490/F1000RESEARCH.1119975.1
2023
BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs
Bioinformatics
·
01 Sep 2023
·
doi:10.1093/bioinformatics/btad570
·
PMID: 37707514
·
PMCID: PMC11015316
An approach for collaborative development of a federated biomedical knowledge graph-based question-answering system: Question-of-the-Month challenges
Journal of Clinical and Translational Science
·
01 Jan 2023
·
doi:10.1017/cts.2023.619
·
PMID: 37900350
·
PMCID: PMC10603356