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Publications

2023

BioThings Explorer: a query engine for a federated knowledge graph of biomedical APIs
Jackson Callaghan, Colleen H Xu, Jiwen Xin, Marco Alvarado Cano, Anders Riutta, …, Kristina Hanspers, Ayushi Agrawal, Alexander R Pico, Chunlei Wu, Andrew I Su
Bioinformatics  ·  01 Sep 2023  ·  doi:10.1093/bioinformatics/btad570  ·  PMID: 37707514  ·  PMCID: PMC11015316
MyGeneset.info: an interactive and programmatic platform for community-curated and user-created collections of genes
Ricardo Avila, Vincent Rubinetti, Xinghua Zhou, Dongbo Hu, Zhongchao Qian, Marco Alvarado Cano, Everaldo Rodolpho, Ginger Tsueng, Casey Greene, Chunlei Wu
Nucleic Acids Research  ·  18 Apr 2023  ·  doi:10.1093/nar/gkad289  ·  PMID: 37070209  ·  PMCID: PMC10481249
Addressing barriers in FAIR data practices for biomedical data
Laura D. Hughes, Ginger Tsueng, Jack DiGiovanna, Thomas D. Horvath, Luke V. Rasmussen, …, Serdar Turkarslan, Qinglong Wu, Chunlei Wu, Andrew I. Su, Lars Pache
Scientific Data  ·  23 Feb 2023  ·  doi:10.1038/s41597-023-01969-8  ·  PMID: 36823198  ·  PMCID: PMC9950056

2022

Generation and network analysis of an RNA-seq transcriptional atlas for the rat
Kim M Summers, Stephen J Bush, Chunlei Wu, David A Hume
NAR Genomics and Bioinformatics  ·  13 Jan 2022  ·  doi:10.1093/nargab/lqac017  ·  PMID: 35265836  ·  PMCID: PMC8900154

2021

Schema Playground: A tool for authoring, extending, and using metadata schemas to improve FAIRness of biomedical data
Marco Cano, Ginger Tsueng, Xinghua Zhou, Laura D. Hughes, Julia L. Mullen, Jiwen Xin, Andrew I. Su, Chunlei Wu
Cold Spring Harbor Laboratory  ·  03 Sep 2021  ·  doi:10.1101/2021.09.02.458726  ·  PMID: 35677074  ·  PMCID: PMC9176648

2020

Data validation and schema interoperability
Leyla Jael Castro, Jerven Bolleman, michel dumontier, Simon Jupp, Jose Emilio Labra-Gayo, Thomas Liener, Tazro Ohta, Núria Queralt-Rosinach, Chunlei Wu
Center for Open Science  ·  07 Apr 2020  ·  doi:10.37044/osf.io/8qdse

2019

ChlamBase: a curated model organism database for the Chlamydia research community
Tim Putman, Kevin Hybiske, Derek Jow, Cyrus Afrasiabi, Sebastien Lelong, …, Gregory S Stupp, Andra Waagmeester, Benjamin M Good, Chunlei Wu, Andrew I Su
Database  ·  01 Jan 2019  ·  doi:10.1093/database/baz041  ·  PMID: 30985891  ·  PMCID: PMC6463448

2017

A high resolution atlas of gene expression in the domestic sheep (Ovis aries)
Emily L. Clark, Stephen J. Bush, Mary E. B. McCulloch, Iseabail L. Farquhar, Rachel Young, …, C. Bruce Whitelaw, Tom C. Freeman, Kim M. Summers, Alan L. Archibald, David A. Hume
PLOS Genetics  ·  15 Sep 2017  ·  doi:10.1371/journal.pgen.1006997  ·  PMID: 28915238  ·  PMCID: PMC5626511
EXPLANe: An Extensible Framework for Poster Annotation with Mobile Devices
Nikhil Gopal, Andrew Su, Chunlei Wu, Sean D. Mooney
Cold Spring Harbor Laboratory  ·  29 Mar 2017  ·  doi:10.1101/121178

Search for Chunlei Wu's papers on the Publications page