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Su Lab project proposal accepted to Biohackathon 2016 in Tsuruoka, Yamagata, Japan

by Tim Putman | Apr 5, 2016 | Gene Wiki, hackathon, proposal, Wikidata

Proposal summary: To create a model organism database web application, using Wikidata as the backend, that the microbial research community can use to load an organism and view its taxonomic information as well as genome, gene and functional annotations all in one...

Gene Wiki and Wikidata: an overview of 2015

by ginger | Jan 7, 2016 | Gene Wiki, Wikidata, wikipedia

2015 was a busy year for the Gene Wiki/Wikidata team—a naturally collaborative and evolving group of researchers from our lab, UCLA, the University of Maryland, Micelio, and more. The team imported about 132 thousand genes (59,530 human, 73,130 mouse) from NCBI into...

Poof it works – using wikidata to build Wikipedia articles about genes

by bgood | Oct 21, 2015 | Gene Wiki, lua, sulab, Wikidata, wikipedia

The Gene Wiki team has been hard at work filling wikidata with useful content about genes, diseases, and drugs using the new and improved ProteinBoxBot.  Now, we are starting to see the fruits of this labor in the context of Wikipedia. Infobox for ARF6, rendered...

1st BD2K/3rd Network of Biothings Hackathon Recap

by ginger | May 13, 2015 | BD2K, Gene Wiki, hackathon, sulab

Let me clarify one thing from the start: My programming skills are extremely limited. That said, I was still very curious as to what a hackathon would be like and concerned about whether or not I’d be able to find a project to which I might make some sort of...

Open source, open science, citizen science – Join us!

by Andrew Su | Apr 15, 2015 | BioGPS, citizen science, Gene Wiki, jobs, mark2cure, open participation science, open science, recruiting

If you follow our lab at all you’ve probably noticed some themes emerging in how we approach bioinformatics and biomedical research. To enumerate a few of those themes, we believe in: Open source: We have benefited from the long tradition of open source software...

BioGPS Featured Article – Study of five novel non-synonymous polymorphisms in human brain-expressed genes in a Colombian sample

by ginger | Feb 25, 2015 | BioGPS, Featured Article Series, Gene Wiki

BioGPS has become the valuable resource that it is because of the contributions from our wonderful user community. Thank you for contributing plugins, suggestions, and ideas–all of which have improved BioGPS for everyone. In order to celebrate the contributions...
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