Publication review 2011

Posted by on Feb 6, 2012 in Gene Wiki, publication, semantic web, text-mining, wikipedia | 0 comments As the end of 2011 was a busy time grant-writing, I didn’t get an opportunity to highlight several recent publications that came out from our lab. Better late than never: Hu Y, Galkin AV, Wu C, Reddy V, Su AI (2011) CAFET Algorithm Reveals Wnt/PCP Signature in Lung Squamous Cell Carcinoma.PLoS ONE 6(10): e25807. (Full text) This paper described CAFET, a novel algorithm for...
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Mining the Gene Wiki

Posted by on Dec 15, 2011 in disease ontology, gene ontology, Gene Wiki, genomics, publication, sulab, text-mining | Comments Off Our article about mining ontology-based gene annotations from the text of the Gene Wiki just came out at BMC Genomics.  Yay!In the article, we discuss the results of what I think might be the simplest text-mining strategy that could possibly work.  Based on the premise that each Gene Wiki article is fundamentally about one particular gene, we make the simplifying assumption that...
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GenomeWeb article on wiki mining mashup

Posted by on Aug 8, 2011 in Gene Wiki, mashup, press, sulab, text-mining | Comments Off I guess we had a reporter in the audience at our talks at ISMB.  Its always fun to get noticed though its a little scary to see something written about your work without ever having spoken with the author.  In this case they got almost everything right.  Thanks for the article Genome...
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