Publication review 2011

As the end of 2011 was a busy time grant-writing, I didn’t get an opportunity to highlight several recent publications that came out from our lab. Better late than never: Hu Y, Galkin AV, Wu C, Reddy V, Su AI (2011) CAFET Algorithm Reveals Wnt/PCP Signature in Lung Squamous Cell Carcinoma.PLoS ONE 6(10): e25807. (Full text) This paper described CAFET, a novel algorithm for enrichment-based...
read more

Mining the Gene Wiki

Our article about mining ontology-based gene annotations from the text of the Gene Wiki just came out at BMC Genomics.  Yay!In the article, we discuss the results of what I think might be the simplest text-mining strategy that could possibly work.  Based on the premise that each Gene Wiki article is fundamentally about one particular gene, we make the simplifying assumption that...
read more

GenomeWeb article on wiki mining mashup

I guess we had a reporter in the audience at our talks at ISMB.  Its always fun to get noticed though its a little scary to see something written about your work without ever having spoken with the author.  In this case they got almost everything right.  Thanks for the article Genome...
read more