BioGPS Spotlight on the Sheep Gene Expression Atlas

In BioGPS, there are a number of Intermine–based model organism plugins (and to a lesser extent model organism data sets) which allow users to explore gene expression in organisms typically studied in biomedical research. Model organisms such as mice, rats, flies, worms, zebra fish, etc. have well-annotated genomes and a lot of well-established tools for further exploring and contributing...
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New MyVariant.info data release log and new data updates

Don't want to look through our blog posts to find previous information about data updates on MyVariant.info? Now you don't have to! Metadata about our data updates is now being logged on in our docs at http://docs.myvariant.info/en/latest/doc/release_changes.html. Hence, from here on out, you can find the most up-to-date metadata on our data releases in our docs. These updates will be in the...
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New Data Release for MyVariant.info 201708

Another fresh data release for MyVariant.info is out! In this data release, we have updated the data from ClinVar and UniProtKB to their latest versions, and also added variant annotation from CIViC and Cancer Genome Interpreter. Here are more details. Data Sources Updated ClinVar was updated to its latest (same version for both hg19 and hg38 assembly). And the variant annotations from UniProtKB...
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New Data Release for MyVariant.info 201706

Another fresh data release for MyVariant.info is out! In this data release, we have updated the data from ClinVar to their latest versions, and also added two new fields under ClinVar and ExAC to handle specific cases, including genotype set and multi-allelic variants. Here are more details. Data Sources Updated ClinVar was updated to its latest (same version for both hg19 and hg38 assembly):...
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New Data Release for MyVariant.info 201704

Another fresh data release for MyVariant.info is out! As we mentioned in the last data release, a refactored backend for data aggregation and updating is now in-place, which streamlines our process of keeping variant annotations up-to-date. In this data release, we have updated the data from ClinVar, dbSNP and dbNSFP to their latest versions, and also added the variant annotations from...
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Pathway data updated in MyGene.info

Just a quick highlight of our recent update on all pathway data in MyGene.info API. Thanks to the excellent pathway/interaction database from ConsensusPathDB, we updated all 10 pathway sub-fields (listed below) for three species (human, mouse and yeast). The underlying data were updated up to Jan 2017 (ConsensusPathDB release 32). Here are some more details. Pathway data from MyGene.info With...
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