New release: MyGene.info Python client updated to v3.0.0

A few weeks ago, we released MyGene.info v3 API, which brings changes to exon field data structure and added accession version numbers to refseq and accession fields, along with some other back-compatible changes. Our Python client mygene module is now updated to use our v3 API as the default. We increased its version from v2.3.0 to v3.0.0, just to match the underlying API version. The mygene...
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BioGPS Spotlight on RGD and RatMine

RatMine is one of several InterMine-based resources available as plugins in BioGPS. Unlike FlyMine and HumanMine (which are run by the InterMine team), RatMine is one of several resources available in the Rat Genome Database (RGD) offered by the Biomedical Informatics Program at the Medical College of Wisconsin. The Rat Genome Database is a well-respected and established resource for rat...
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BioGPS Spotlight on HumanMine

In our last spotlight we covered FlyMine, one of two mines maintained by the InterMine group at Cambridge University. This week’s spotlight is on HumanMine, the second of the two aforementioned mines. Yo Yehudi (developer), and Rachel Lyne (biologist) were kind enough to answer our questions for this post. In one tweet or less, introduce us to HumanMine: HumanMine integrates genomic data from...
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MyGene.info v3 API is out !

We're proud to announce the next version of MyGene.info! This 3rd version brings new features, fixes some issues, and can be reached using URL http://mygene.info/v3. MyGene.info v2 will remain up and active while transitioning to v3. Stay tuned, we'll also post a step-by-step guide to migrate from v2 to v3. Here's a brief list of changes, we'll discuss some of them in depth in next posts: Refseq...
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Help ensure BioGPS remains available

2016.06.28 update- We need letters of support submitted by Friday, July 1st…please help! In the last two months, we focused on encouraging the user community to add and review more plugins. Since its humble beginnings, BioGPS has been a product of an amazing community of users–users who have extended its functionality with plugins, and aided its development with their letters of...
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BioGPS Spotlight on FlyMine

As seen in our previous spotlight on InterMine, FlyMine is the prototypical InterMine database which is one of two mines currently being maintained by the InterMine team. This week, we’ll delve into FlyMine and how this resource has added value to the fly and mosquito research communities. Yo Yehudi (developer), and Rachel Lyne (biologist) were kind enough to answer our questions for this post....
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