The Su Lab
  • Home
  • Research
    • Crowdsourcing Biology
      • BioGPS
      • Gene Wiki
      • Mark2Cure
    • Integrative Biology
    • Funding Sources
  • Tools
    • BioGPS
    • Omics Pipe
    • OncoRep
  • Blog
  • The team
    • Andrew Su
    • The team
      • Chunlei Wu
      • Ginger Tsueng
      • Cyrus Afrasiabi
      • Tong Shu (Toby) Li
      • Jiwen (Kevin) Xin
      • Jake Bruggemann
      • Karthik Gangavarapu
      • Ryan Thompson
      • Sebastien Lelong
      • Mike Mayers
      • Nuria Queralt Rosinach
      • Laura Hughes
      • Marco Cano
      • Jerry Zhou
      • Roger Tu
      • Kai-yu Chen
      • Sabah Ul-Hasan
      • Andrea Hom
    • Collaborators
    • Join the team
  • Media
    • Photos
    • Presentation Slides
    • Videos
  • Publications
  • Contact us
Select Page

Information extraction and the missing Mark2Cure module

by ginger | Aug 25, 2017 | biocuration, citizen science, information extraction, mark2cure, national park services

In our previous post, we asked readers, ‘What is your preferred moniker?’. Here is the response: Mark2Curator: 36% Citizen Scientist: 36% Contributor: 18% “Anything BUT volunpeer”: 10% Although it may seem a little strange that researchers have...

Happy Fathers Day!

by ginger | Jun 18, 2017 | biocuration, citizen science, conference, mark2cure, presentation

A HUGE thanks to all the dads (and EVERYONE) who has been contributing to make a difference for the NGLY1 families. Shipping delays Apologies to international prize and drawing winners who were waiting for their prizes. Most of the international packages that we...

2016 – A busy year for Gene Wiki and WikiData

by ginger | Dec 26, 2016 | big data, biocuration, conference, Gene Wiki, poster, presentation, publication, semantic wikipedia, wiki, Wikidata, wikipedia

I knew it! Last year, I struggled with the year-end post for the Gene Wiki/WikiData (AKA the Gene WikiData) project because the Gene WikiData team was incredibly active. I learned my lesson, and attempted to better track their activity earlier this year with a running...

A simple way to write Wikidata bots

by Sebastian Burgstaller | Sep 9, 2015 | biocuration, code, community intelligence, wiki, Wikidata, wikipedia

Introduction: Sulab has proven it’s love for Wikipedia by creating the GeneWiki[1]. Wikipedia is primarily a collection of free-text pages which also can contain some structured data in the form of infoboxes. In order to increase the abilities of handling and...

Mark2Cure presentation at FOGM15

by ginger | Mar 6, 2015 | amt, biocuration, citizen science, collective intelligence, community intelligence, community-annotation, crowdsourcing, mark2cure

[View the story “Researchers amazed by citizen scientists in biocuration effort” on Storify]

Finding buried treasure in shifting sand

by ginger | Aug 29, 2014 | biocuration, BioThings, citizen science, crowdsourcing, data mining, mark2cure, research, sulab

The problem of keeping up with scientific literature is not new. In 1986, information scientist, Don R. Swanson, published an article about mining the wealth of knowledge buried in academic literature. In his article, “Undiscovered public knowledge”,...
« Older Entries

Subscribe

Enter your email address:

Archives

Categories

  • #citscichat (1)
  • abstract (1)
  • amt (3)
  • annual summary (3)
  • api (3)
  • application (2)
  • ASHG (1)
  • assembly (2)
  • Audubon Bird Counts (1)
  • award (2)
  • banner (2)
  • BD2K (6)
  • befree (1)
  • big data (4)
  • bio-ontologies (4)
  • biocuration (8)
  • BioGPS (224)
  • bioinformatics (18)
  • Biomedical Informatics (3)
  • biomedical research (2)
  • BioThings (20)
  • book (1)
  • breast cancer (8)
  • cancer (8)
  • career (3)
  • career advice (2)
  • challenges (1)
  • chordoma (2)
  • circos (1)
  • citizen science (103)
  • CitSci2017 (1)
  • CitSciMedBlitz (2)
  • class prediction (1)
  • classification (3)
  • client (6)
  • clinvar (1)
  • Cochrane Crowd (8)
  • code (4)
  • collective intelligence (12)
  • collective wisdom (7)
  • combo (1)
  • community intelligence (31)
  • community-annotation (17)
  • conference (24)
  • cover letter (2)
  • crowdsourcing (114)
  • cryo-em (1)
  • customizability (5)
  • data mining (8)
  • data release (10)
  • database (4)
  • Dazzle4Rare (1)
  • dbnsfp (1)
  • decision-trees (2)
  • deepdive (1)
  • disease ontology (3)
  • dizeez (4)
  • Dizeez. GenESP (1)
  • driving biological project (2)
  • events (3)
  • exac (1)
  • extensibility (6)
  • EyesOnAlz (3)
  • eyewire (1)
  • feature (14)
  • feature selection (1)
  • Featured Article Series (23)
  • Featured Researcher Series (1)
  • fitting in (1)
  • foldit (2)
  • funding (3)
  • GalaxyZoo (1)
  • games (30)
  • GenBank (1)
  • gene expression (2)
  • GENE journal (1)
  • gene ontology (2)
  • Gene Wiki (54)
  • genegames (8)
  • GeneOfTheWeek (53)
  • genesp (1)
  • genewiki+ (5)
  • GeneWikiRenewal (7)
  • genome (2)
  • genome biology (2)
  • genomics (3)
  • GO (4)
  • grant (7)
  • GSoC (3)
  • gwaps (11)
  • hackathon (10)
  • hassan (1)
  • hgf (2)
  • hockey (1)
  • http (1)
  • https (1)
  • human (1)
  • hypothesis generation (1)
  • information extraction (1)
  • interview (1)
  • ISCB (1)
  • ISMB (3)
  • ISMB2011 (2)
  • ISMB2012 (2)
  • job (1)
  • job search (2)
  • jobs (8)
  • JSON-LD (1)
  • knowledge.bio (1)
  • layouts (5)
  • long tail (9)
  • lua (1)
  • machine learning (4)
  • mark2cure (113)
  • mascot (1)
  • mashup (2)
  • mass collaboration (2)
  • MedLitBlitz (3)
  • microaray (1)
  • microformats (1)
  • microtask (4)
  • migration (3)
  • mobianga (1)
  • mouse (1)
  • mygene (5)
  • mygene.info (31)
  • mygene.py (3)
  • mygene.R (1)
  • myvariant.info (22)
  • myvariant.js (1)
  • myvariant.py (5)
  • myvariant.R (2)
  • NAGA (1)
  • NAR (2)
  • national park services (1)
  • natural-language-processing (1)
  • network (1)
  • network of biothings (6)
  • Network-Augmented Genomic Analysis (1)
  • new job (1)
  • newrelease (4)
  • NewYear (4)
  • NIH (5)
  • nlp (6)
  • nodejs (1)
  • office space (1)
  • Omics Pipe (1)
  • Ontologies (1)
  • Ontologies (1)
  • open participation science (5)
  • open science (5)
  • outsourcing (3)
  • Personalized Medicine (1)
  • pipelines (1)
  • plugin (39)
  • policy (1)
  • polls (1)
  • postdoc (1)
  • poster (5)
  • presentation (8)
  • press (3)
  • press (2)
  • prize (2)
  • proposal (2)
  • publication (8)
  • publications (3)
  • pulse (1)
  • python (5)
  • quotes (1)
  • r21 (1)
  • r4d (1)
  • random forest (1)
  • Rare diseaes (1)
  • Rare Disease Day (1)
  • recruiting (10)
  • research (5)
  • review articles (1)
  • sage (2)
  • san diego (2)
  • science (4)
  • Science contest (3)
  • Science Game Lab (1)
  • scistarter (2)
  • search (2)
  • semantic links (2)
  • semantic web (8)
  • semantic wikipedia (4)
  • serious games (2)
  • SGL (1)
  • snpeff (1)
  • SPARQL (5)
  • special-session (1)
  • species (4)
  • spotlight (28)
  • staff-scientist (2)
  • starving student (1)
  • student (1)
  • Su lab (4)
  • Su lab members (11)
  • sulab (114)
  • Surfing (1)
  • SWL (2)
  • symatlas (5)
  • synapse (1)
  • taxonomy (3)
  • tech (3)
  • text-mining (3)
  • The Cure (2)
  • thecure (5)
  • Thursday Science (3)
  • topcoder (3)
  • training period (1)
  • tsri (2)
  • tutorial (1)
  • Twitter (2)
  • UMLS (1)
  • Uncategorized (5)
  • uniprot (1)
  • usage stats (12)
  • visualization (3)
  • Web (1)
  • web development (2)
  • web services (5)
  • Webinar (1)
  • wiki (10)
  • Wikidata (11)
  • wikipedia (14)
  • wisdom of the crowd (1)
  • work (18)
  • work place terratories (1)
  • zooniverse (4)
  • Twitter
  • Google
  • RSS
The Su Lab © 2019 All Rights Reserved