Cyrus Afrasiabi

Cyrus Afrasiabi

Cyrus Afrasiabi

Programmer

Department of Integrative, Structural and Computational Biology
The Scripps Research Institute
cyrus at scripps dot edu

Bio

I came to the Su Lab from UC Berkeley where I worked in a phylogenomics lab primarily doing bioinformatics application development. Before this I did work on the analysis of medical images, the analysis of animal vocalizations, and digital system design. I am currently working on the myvariant.info project.

 

Education

2011 M. Eng. in Biomedical Engineering from Cornell University
2003 BS in Electrical and Computer Engineering from Cornell University

Recent Posts

Recent Publications

ChlamBase: a curated model organism database for the Chlamydia research community.
Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Stupp GS, Waagmeester A, Good BM, Wu C, Su AI. Database (Oxford)

ChlamBase: a curated model organism database for the Chlamydia research community.
Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Wu C, Su AI. Database (Oxford)

Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken.
Bush SJ, Freem L, MacCallum AJ, O'Dell J, Wu C, Afrasiabi C, Psifidi A, Stevens MP, Smith J, Summers KM, Hume DA. BMC Genomics

Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration.
Xin J, Afrasiabi C, Lelong S, Adesara J, Tsueng G, Su AI, Wu C. BMC Bioinformatics

A high resolution atlas of gene expression in the domestic sheep (Ovis aries).
Clark EL, Bush SJ, McCulloch MEB, Farquhar IL, Young R, Lefevre L, Pridans C, Tsang HG, Wu C, Afrasiabi C, Watson M, Whitelaw CB, Freeman TC, Summers KM, Archibald AL, Hume DA. PLoS Genet

High-performance web services for querying gene and variant annotation.
Xin J, Mark A, Afrasiabi C, Tsueng G, Juchler M, Gopal N, Stupp GS, Putman TE, Ainscough BJ, Griffith OL, Torkamani A, Whetzel PL, Mungall CJ, Mooney SD, Su AI, Wu C. Genome Biol

BioGPS: building your own mash-up of gene annotations and expression profiles.
Wu C, Jin X, Tsueng G, Afrasiabi C, Su AI. Nucleic Acids Res

The PhyloFacts FAT-CAT web server: ortholog identification and function prediction using fast approximate tree classification.
Afrasiabi C, Samad B, Dineen D, Meacham C, Sjölander K. Nucleic Acids Res


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More publications may be available, check PubMed