Chunlei Wu

Chunlei Wu

Chunlei Wu

Associate Professor

Department of Integrative, Structural and Computational Biology
The Scripps Research Institute
cwu@scripps.edu
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Bio

Chunlei Wu is an Associate Professor of Molecular Medicine in the Department of Molecular and Experimental Medicine at the Scripps Research Institute. Prior to joining Scripps in July 2011, he was the Research Investigator II at the Genomics Institute of the Novartis Research Foundation (GNF) in San Diego, CA. Chunlei originally joined TSRI as a member of the Su Lab, but has since become a principal investigator of his own lab and now has his own site at http://wulab.io. Chunlei and Andrew continue to work together in a highly open and collaborative manner.

Education

Ph.D., Biomathmetics and biostatistics, The University of Texas Health Science Center at Houston

Recent Posts

Pathway data updated in MyGene.info

Just a quick highlight of our recent update on all pathway data in MyGene.info API. Thanks to the excellent pathway/interaction database from ConsensusPathDB, we updated all 10 pathway sub-fields (listed below) for three species (human, mouse and...

New Data Release 201703

You might have noticed that MyVariant.info has not had a data update for quite for a while, until recently. No, we did not go out on vacation :-). In the past a few months, we have been busy refactoring our backend data aggregation and updating our...

Recent Publications

Advancing computational biology and bioinformatics research through open innovation competitions.
Blasco A, Endres MG, Sergeev RA, Jonchhe A, Macaluso NJM, Narayan R, Natoli T, Paik JH, Briney B, Wu C, Su AI, Subramanian A, Lakhani KR. PLoS One

ChlamBase: a curated model organism database for the Chlamydia research community.
Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Stupp GS, Waagmeester A, Good BM, Wu C, Su AI. Database (Oxford)

ChlamBase: a curated model organism database for the Chlamydia research community.
Putman T, Hybiske K, Jow D, Afrasiabi C, Lelong S, Cano MA, Wu C, Su AI. Database (Oxford)

exRNA Atlas Analysis Reveals Distinct Extracellular RNA Cargo Types and Their Carriers Present across Human Biofluids.
Murillo OD, Thistlethwaite W, Rozowsky J, Subramanian SL, Lucero R, Shah N, Jackson AR, Srinivasan S, Chung A, Laurent CD, Kitchen RR, Galeev T, Warrell J, Diao JA, Welsh JA, Hanspers K, Riutta A, Burgstaller-Muehlbacher S, Shah RV, Yeri A, Jenkins LM, Ahsen ME, Cordon-Cardo C, Dogra N, Gifford SM, Smith JT, Stolovitzky G, Tewari AK, Wunsch BH, Yadav KK, Danielson KM, Filant J, Moeller C, Nejad P, Paul A, Simonson B, Wong DK, Zhang X, Balaj L, Gandhi R, Sood AK, Alexander RP, Wang L, Wu C, Wong DTW, Galas DJ, Van Keuren-Jensen K, Patel T, Jones JC, Das S, Cheung KH, Pico AR, Su AI, Raffai RL, Laurent LC, Roth ME, Gerstein MB, Milosavljevic A. Cell

Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken.
Bush SJ, Freem L, MacCallum AJ, O'Dell J, Wu C, Afrasiabi C, Psifidi A, Stevens MP, Smith J, Summers KM, Hume DA. BMC Genomics

Diverse reprogramming codes for neuronal identity.
Tsunemoto R, Lee S, Szűcs A, Chubukov P, Sokolova I, Blanchard JW, Eade KT, Bruggemann J, Wu C, Torkamani A, Sanna PP, Baldwin KK. Nature

Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration.
Xin J, Afrasiabi C, Lelong S, Adesara J, Tsueng G, Su AI, Wu C. BMC Bioinformatics

A high resolution atlas of gene expression in the domestic sheep (Ovis aries).
Clark EL, Bush SJ, McCulloch MEB, Farquhar IL, Young R, Lefevre L, Pridans C, Tsang HG, Wu C, Afrasiabi C, Watson M, Whitelaw CB, Freeman TC, Summers KM, Archibald AL, Hume DA. PLoS Genet

WikiGenomes: an open web application for community consumption and curation of gene annotation data in Wikidata.
Putman TE, Lelong S, Burgstaller-Muehlbacher S, Waagmeester A, Diesh C, Dunn N, Munoz-Torres M, Stupp GS, Wu C, Su AI, Good BM. Database (Oxford)

CIViC is a community knowledgebase for expert crowdsourcing the clinical interpretation of variants in cancer.
Griffith M, Spies NC, Krysiak K, McMichael JF, Coffman AC, Danos AM, Ainscough BJ, Ramirez CA, Rieke DT, Kujan L, Barnell EK, Wagner AH, Skidmore ZL, Wollam A, Liu CJ, Jones MR, Bilski RL, Lesurf R, Feng YY, Shah NM, Bonakdar M, Trani L, Matlock M, Ramu A, Campbell KM, Spies GC, Graubert AP, Gangavarapu K, Eldred JM, Larson DE, Walker JR, Good BM, Wu C, Su AI, Dienstmann R, Margolin AA, Tamborero D, Lopez-Bigas N, Jones SJ, Bose R, Spencer DH, Wartman LD, Wilson RK, Mardis ER, Griffith OL. Nat Genet

More publications may be available, check PubMed